[AMBER] CPPTRAJ question: How to do RMS on a trajectory fragment?

From: Jose Borreguero <borreguero.gmail.com>
Date: Thu, 6 Jul 2017 14:41:58 -0400

Dear Amber users,

I want to do RMS on different trajectory fragments. Right now I extract one
fragment and save to file, then read the file as my new trajectory to
calculate RMS. This for each fragment :(

Is there a way to avoid this writing/reading? The RMS command does not seem
to have *start* and *stop* options, like *atomicfluct *does.

Best,
.Jose
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Received on Thu Jul 06 2017 - 12:00:02 PDT
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