Dear Amber Users,
I'm having an issue compiling Amber16 pmemd.cuda (serial). The compilation keeps erroring out at the same point. I've installed the standard Amber serial and mpi packages with no issues. I have a geforce 1070 GPU with cuda installed (which passed the basic Nvidia CUDA tests). I'm using cuda 8.0 and the gnu compilers outlined in the general Amber installation notes. The error I'm getting is "/usr/bin/ld: cannot find -lcuda" (see below).
I'm sure I've overlooked something basic. I've included below the last bit of the compilation output.
Thank you in advance for your help.
Alex Spring-Connell
make[3]: Leaving directory `/usr/localtest/amber16/AmberTools/src/arpack'
/usr/local/cuda/bin/nvcc -gencode arch=compute_20,code=sm_20 -gencode arch=compute_30,code=sm_30 -gencode arch=compute_50,code=sm_50 -gencode arch=compute_52,code=sm_52 -gencode arch=compute_53,code=sm_53 -gencode arch=compute_60,code=sm_60 -gencode arch=compute_61,code=sm_61 -use_fast_math -O3 -ccbin g++ -I../cusplibrary-0.6.0-rc -o cuda_cg_wrapper.o -c cuda_cg_wrapper.cu -DCUSP -DPCG -DJacobi -DDIA
nvcc warning : The 'compute_20', 'sm_20', and 'sm_21' architectures are deprecated, and may be removed in a future release (Use -Wno-deprecated-gpu-targets to suppress warning).
g++ -fPIC -O3 -o band2csr.o -c band2csr.cpp
gfortran -DBINTRAJ -DEMIL -fPIC -ffree-form -I/usr/localtest/amber16/include -I/usr/localtest/amber16/include -o pbsa.cuda \
dsvdc.o pbsa.o pb_read.o pb_write.o getcoor.o runmd.o runmin.o force.o pbsa_lib.o pb_init.o sa_driver.o density.o np_force.o pb_force.o pb_p3m.o pb_fdfrc.o pb_crgview.o pb_fddrv.o pb_iimdrv.o pb_nlsolver.o pb_bldsys.o pb_mpfrc.o pb_direct.o pb_list.o timer.o egb.o ene.o locmem.o myopen.o rdparm.o pb_lsolver.o decomp.o rgroup.o rfree.o debug.o coed20.o irre32.o phidev.o project.o qld.o coed6.o irre31.o miniop.o iimod.o prodis.o qint.o wint.o transf.o curv.o GrToPr.o jumps.o problem.o regular.o gmres.o daxpy.o ddot.o dheqr.o dpigmr.o dscal.o dslui2.o dxlcal.o dchkw.o dgmres.o dnrm2.o drlcal.o dsilus.o dslui.o isdgmr.o dcopy.o dhels.o dorth.o ds2y.o dslugm.o dsmv.o qs2i1d.o d1mach.o fdump.o i1mach.o j4save.o xercnt.o xerhlt.o xermsg.o xerprn.o xersve.o xgetua.o bicg.o dbcg.o dslui4.o dsluti.o dsmtv.o dslubc.o isdbcg.o pb_chkfrc.o svdcmp.o svbksb.o pythag.o pb_augdrv.o gmresX.o interpX.o matvec3.o gen_dx_file.o aug_iccg.o parms.o memory_module.o rdpqr.o cuda_
cg_wrapper.o band2csr.o -L/usr/local/cuda/lib64 -L/usr/local/cuda/lib -lcublas -lcusparse -lcudart -lcuda -lstdc++ -I/usr/local/cuda/include \
../lib/nxtsec.o ../lib/random.o \
-L/usr/localtest/amber16/lib -larpack -llapack -lblas
/usr/bin/ld: cannot find -lcuda
collect2: error: ld returned 1 exit status
make[2]: *** [pbsa.cuda] Error 1
make[2]: Leaving directory `/usr/localtest/amber16/AmberTools/src/pbsa'
make[1]: *** [cuda_serial] Error 2
make[1]: Leaving directory `/usr/localtest/amber16/AmberTools/src'
make: *** [install] Error 2
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Fri Jun 16 2017 - 05:30:04 PDT
