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-- Shahid. On Fri, Jun 16, 2017 at 2:05 PM, Alexander Martin Spring-Connell < aspring1.gsu.edu> wrote: > Dear Amber Users, > > I'm having an issue compiling Amber16 pmemd.cuda (serial). The > compilation keeps erroring out at the same point. I've installed the > standard Amber serial and mpi packages with no issues. I have a geforce > 1070 GPU with cuda installed (which passed the basic Nvidia CUDA tests). > I'm using cuda 8.0 and the gnu compilers outlined in the general Amber > installation notes. The error I'm getting is "/usr/bin/ld: cannot find > -lcuda" (see below). > > I'm sure I've overlooked something basic. I've included below the last > bit of the compilation output. > > Thank you in advance for your help. > > Alex Spring-Connell > > > > > make[3]: Leaving directory `/usr/localtest/amber16/AmberTools/src/arpack' > /usr/local/cuda/bin/nvcc -gencode arch=compute_20,code=sm_20 -gencode > arch=compute_30,code=sm_30 -gencode arch=compute_50,code=sm_50 -gencode > arch=compute_52,code=sm_52 -gencode arch=compute_53,code=sm_53 -gencode > arch=compute_60,code=sm_60 -gencode arch=compute_61,code=sm_61 > -use_fast_math -O3 -ccbin g++ -I../cusplibrary-0.6.0-rc -o > cuda_cg_wrapper.o -c cuda_cg_wrapper.cu -DCUSP -DPCG -DJacobi -DDIA > nvcc warning : The 'compute_20', 'sm_20', and 'sm_21' architectures are > deprecated, and may be removed in a future release (Use > -Wno-deprecated-gpu-targets to suppress warning). > g++ -fPIC -O3 -o band2csr.o -c band2csr.cpp > gfortran -DBINTRAJ -DEMIL -fPIC -ffree-form -I/usr/localtest/amber16/include > -I/usr/localtest/amber16/include -o pbsa.cuda \ > dsvdc.o pbsa.o pb_read.o pb_write.o getcoor.o runmd.o runmin.o > force.o pbsa_lib.o pb_init.o sa_driver.o density.o np_force.o pb_force.o > pb_p3m.o pb_fdfrc.o pb_crgview.o pb_fddrv.o pb_iimdrv.o pb_nlsolver.o > pb_bldsys.o pb_mpfrc.o pb_direct.o pb_list.o timer.o egb.o ene.o locmem.o > myopen.o rdparm.o pb_lsolver.o decomp.o rgroup.o rfree.o debug.o coed20.o > irre32.o phidev.o project.o qld.o coed6.o irre31.o miniop.o iimod.o > prodis.o qint.o wint.o transf.o curv.o GrToPr.o jumps.o problem.o > regular.o gmres.o daxpy.o ddot.o dheqr.o dpigmr.o dscal.o dslui2.o > dxlcal.o dchkw.o dgmres.o dnrm2.o drlcal.o dsilus.o dslui.o isdgmr.o > dcopy.o dhels.o dorth.o ds2y.o dslugm.o dsmv.o qs2i1d.o > d1mach.o fdump.o i1mach.o j4save.o xercnt.o xerhlt.o xermsg.o > xerprn.o xersve.o xgetua.o bicg.o dbcg.o dslui4.o dsluti.o dsmtv.o > dslubc.o isdbcg.o pb_chkfrc.o svdcmp.o svbksb.o pythag.o pb_augdrv.o > gmresX.o interpX.o matvec3.o gen_dx_file.o aug_iccg.o parms.o > memory_module.o rdpqr.o cuda_cg_wrapper.o band2csr.o > -L/usr/local/cuda/lib64 -L/usr/local/cuda/lib -lcublas -lcusparse -lcudart > -lcuda -lstdc++ -I/usr/local/cuda/include \ > ../lib/nxtsec.o ../lib/random.o \ > -L/usr/localtest/amber16/lib -larpack -llapack -lblas > /usr/bin/ld: cannot find -lcuda > collect2: error: ld returned 1 exit status > make[2]: *** [pbsa.cuda] Error 1 > make[2]: Leaving directory `/usr/localtest/amber16/AmberTools/src/pbsa' > make[1]: *** [cuda_serial] Error 2 > make[1]: Leaving directory `/usr/localtest/amber16/AmberTools/src' > make: *** [install] Error 2 > > > _______________________________________________ > AMBER mailing list > AMBER.ambermd.org > http://lists.ambermd.org/mailman/listinfo/amber > _______________________________________________ AMBER mailing list AMBER.ambermd.org http://lists.ambermd.org/mailman/listinfo/amberReceived on Fri Jun 16 2017 - 06:30:03 PDT