On Fri, Apr 21, 2017 at 3:43 PM, Baker, Joseph <bakerj.tcnj.edu> wrote:
> Hi Hai,
>
> Thanks. So looking in the AmberTools/src directory, I see a number of
> directories that are updated to today's date actually, so it does seem that
> something must have been extracted? For example, paramfit, parmed, cpptraj,
> etc., are updated to today's date. There are a few that are not, for
> example sebomd directory, ucpp-1.3 directory, include directory lapack
> directory, lib directory, and some others. I am not sure if they are all
> supposed to be Apr21 in there now?
> So perhaps some directories got
> extracted okay but not others?
yeah
Hai
>
> Joe
>
>
> ------
> Joseph Baker, PhD
> Assistant Professor
> Department of Chemistry
> C101 Science Complex
> The College of New Jersey
> Ewing, NJ 08628
> Phone: (609) 771-3173
> Web: http://bakerj.pages.tcnj.edu/
>
>
> On Fri, Apr 21, 2017 at 3:39 PM, Hai Nguyen <nhai.qn.gmail.com> wrote:
>
>> On Fri, Apr 21, 2017 at 3:36 PM, Baker, Joseph <bakerj.tcnj.edu> wrote:
>> > Perhaps that warning at the end of my original email about __exit__ does
>> > not matter, and I can just run ./configure now manually without any
>> trouble?
>>
>> I don't think so. The error meant that the tarfile was not
>> successfully extracted.
>>
>> Let's wait for Jason (who wrote that script) to give feedback.
>>
>> Meanwhile, may be playing with the tarfile downloaded from amber website?
>>
>> thanks.
>> Hai
>>
>> >
>> >
>> > ------
>> > Joseph Baker, PhD
>> > Assistant Professor
>> > Department of Chemistry
>> > C101 Science Complex
>> > The College of New Jersey
>> > Ewing, NJ 08628
>> > Phone: (609) 771-3173
>> > Web: http://bakerj.pages.tcnj.edu/
>> >
>> >
>> > On Fri, Apr 21, 2017 at 3:30 PM, Baker, Joseph <bakerj.tcnj.edu> wrote:
>> >
>> >> Hi Hai,
>> >>
>> >> I just tried that and get the following output
>> >>
>> >> [root.neon amber16]# miniconda/bin/python update_amber --upgrade
>> >> No major upgrade available.
>> >> [root.neon amber16]#
>> >>
>> >>
>> >> ------
>> >> Joseph Baker, PhD
>> >> Assistant Professor
>> >> Department of Chemistry
>> >> C101 Science Complex
>> >> The College of New Jersey
>> >> Ewing, NJ 08628
>> >> Phone: (609) 771-3173
>> >> Web: http://bakerj.pages.tcnj.edu/
>> >>
>> >>
>> >> On Fri, Apr 21, 2017 at 3:27 PM, Nhai <nhai.qn.gmail.com> wrote:
>> >>
>> >> >
>> >> >
>> >> > > On Apr 21, 2017, at 3:23 PM, Baker, Joseph <bakerj.tcnj.edu> wrote:
>> >> > >
>> >> > > $AMBERHOME/miniconda/bin
>> >> >
>> >> > Uhm, python 2.6 does not have context manger for tarfile. Can you use
>> >> > miniconda python
>> >> >
>> >> > $AMBERHOME/miniconda/bin/python update_amber --upgrade
>> >> >
>> >> > (Or use amber.python which is alias of miniconda python).
>> >> >
>> >> > Hai
>> >> > _______________________________________________
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>> >> > http://lists.ambermd.org/mailman/listinfo/amber
>> >> >
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Received on Fri Apr 21 2017 - 13:00:06 PDT
