Okay, will wait for Jason to weigh in. Thanks, Hai.
Joe
------
Joseph Baker, PhD
Assistant Professor
Department of Chemistry
C101 Science Complex
The College of New Jersey
Ewing, NJ 08628
Phone: (609) 771-3173
Web: http://bakerj.pages.tcnj.edu/
On Fri, Apr 21, 2017 at 3:46 PM, Hai Nguyen <nhai.qn.gmail.com> wrote:
> On Fri, Apr 21, 2017 at 3:43 PM, Baker, Joseph <bakerj.tcnj.edu> wrote:
> > Hi Hai,
> >
> > Thanks. So looking in the AmberTools/src directory, I see a number of
> > directories that are updated to today's date actually, so it does seem
> that
> > something must have been extracted? For example, paramfit, parmed,
> cpptraj,
> > etc., are updated to today's date. There are a few that are not, for
> > example sebomd directory, ucpp-1.3 directory, include directory lapack
> > directory, lib directory, and some others. I am not sure if they are all
> > supposed to be Apr21 in there now?
>
> > So perhaps some directories got
> > extracted okay but not others?
>
> yeah
>
> Hai
>
> >
> > Joe
> >
> >
> > ------
> > Joseph Baker, PhD
> > Assistant Professor
> > Department of Chemistry
> > C101 Science Complex
> > The College of New Jersey
> > Ewing, NJ 08628
> > Phone: (609) 771-3173
> > Web: http://bakerj.pages.tcnj.edu/
> >
> >
> > On Fri, Apr 21, 2017 at 3:39 PM, Hai Nguyen <nhai.qn.gmail.com> wrote:
> >
> >> On Fri, Apr 21, 2017 at 3:36 PM, Baker, Joseph <bakerj.tcnj.edu> wrote:
> >> > Perhaps that warning at the end of my original email about __exit__
> does
> >> > not matter, and I can just run ./configure now manually without any
> >> trouble?
> >>
> >> I don't think so. The error meant that the tarfile was not
> >> successfully extracted.
> >>
> >> Let's wait for Jason (who wrote that script) to give feedback.
> >>
> >> Meanwhile, may be playing with the tarfile downloaded from amber
> website?
> >>
> >> thanks.
> >> Hai
> >>
> >> >
> >> >
> >> > ------
> >> > Joseph Baker, PhD
> >> > Assistant Professor
> >> > Department of Chemistry
> >> > C101 Science Complex
> >> > The College of New Jersey
> >> > Ewing, NJ 08628
> >> > Phone: (609) 771-3173
> >> > Web: http://bakerj.pages.tcnj.edu/
> >> >
> >> >
> >> > On Fri, Apr 21, 2017 at 3:30 PM, Baker, Joseph <bakerj.tcnj.edu>
> wrote:
> >> >
> >> >> Hi Hai,
> >> >>
> >> >> I just tried that and get the following output
> >> >>
> >> >> [root.neon amber16]# miniconda/bin/python update_amber --upgrade
> >> >> No major upgrade available.
> >> >> [root.neon amber16]#
> >> >>
> >> >>
> >> >> ------
> >> >> Joseph Baker, PhD
> >> >> Assistant Professor
> >> >> Department of Chemistry
> >> >> C101 Science Complex
> >> >> The College of New Jersey
> >> >> Ewing, NJ 08628
> >> >> Phone: (609) 771-3173
> >> >> Web: http://bakerj.pages.tcnj.edu/
> >> >>
> >> >>
> >> >> On Fri, Apr 21, 2017 at 3:27 PM, Nhai <nhai.qn.gmail.com> wrote:
> >> >>
> >> >> >
> >> >> >
> >> >> > > On Apr 21, 2017, at 3:23 PM, Baker, Joseph <bakerj.tcnj.edu>
> wrote:
> >> >> > >
> >> >> > > $AMBERHOME/miniconda/bin
> >> >> >
> >> >> > Uhm, python 2.6 does not have context manger for tarfile. Can you
> use
> >> >> > miniconda python
> >> >> >
> >> >> > $AMBERHOME/miniconda/bin/python update_amber --upgrade
> >> >> >
> >> >> > (Or use amber.python which is alias of miniconda python).
> >> >> >
> >> >> > Hai
> >> >> > _______________________________________________
> >> >> > AMBER mailing list
> >> >> > AMBER.ambermd.org
> >> >> > http://lists.ambermd.org/mailman/listinfo/amber
> >> >> >
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> >> >>
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> >> > AMBER mailing list
> >> > AMBER.ambermd.org
> >> > http://lists.ambermd.org/mailman/listinfo/amber
> >>
> >> _______________________________________________
> >> AMBER mailing list
> >> AMBER.ambermd.org
> >> http://lists.ambermd.org/mailman/listinfo/amber
> >>
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> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
>
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Received on Fri Apr 21 2017 - 13:30:02 PDT
