Hi Hai,
Thanks. So looking in the AmberTools/src directory, I see a number of
directories that are updated to today's date actually, so it does seem that
something must have been extracted? For example, paramfit, parmed, cpptraj,
etc., are updated to today's date. There are a few that are not, for
example sebomd directory, ucpp-1.3 directory, include directory lapack
directory, lib directory, and some others. I am not sure if they are all
supposed to be Apr21 in there now? So perhaps some directories got
extracted okay but not others?
Joe
------
Joseph Baker, PhD
Assistant Professor
Department of Chemistry
C101 Science Complex
The College of New Jersey
Ewing, NJ 08628
Phone: (609) 771-3173
Web: http://bakerj.pages.tcnj.edu/
On Fri, Apr 21, 2017 at 3:39 PM, Hai Nguyen <nhai.qn.gmail.com> wrote:
> On Fri, Apr 21, 2017 at 3:36 PM, Baker, Joseph <bakerj.tcnj.edu> wrote:
> > Perhaps that warning at the end of my original email about __exit__ does
> > not matter, and I can just run ./configure now manually without any
> trouble?
>
> I don't think so. The error meant that the tarfile was not
> successfully extracted.
>
> Let's wait for Jason (who wrote that script) to give feedback.
>
> Meanwhile, may be playing with the tarfile downloaded from amber website?
>
> thanks.
> Hai
>
> >
> >
> > ------
> > Joseph Baker, PhD
> > Assistant Professor
> > Department of Chemistry
> > C101 Science Complex
> > The College of New Jersey
> > Ewing, NJ 08628
> > Phone: (609) 771-3173
> > Web: http://bakerj.pages.tcnj.edu/
> >
> >
> > On Fri, Apr 21, 2017 at 3:30 PM, Baker, Joseph <bakerj.tcnj.edu> wrote:
> >
> >> Hi Hai,
> >>
> >> I just tried that and get the following output
> >>
> >> [root.neon amber16]# miniconda/bin/python update_amber --upgrade
> >> No major upgrade available.
> >> [root.neon amber16]#
> >>
> >>
> >> ------
> >> Joseph Baker, PhD
> >> Assistant Professor
> >> Department of Chemistry
> >> C101 Science Complex
> >> The College of New Jersey
> >> Ewing, NJ 08628
> >> Phone: (609) 771-3173
> >> Web: http://bakerj.pages.tcnj.edu/
> >>
> >>
> >> On Fri, Apr 21, 2017 at 3:27 PM, Nhai <nhai.qn.gmail.com> wrote:
> >>
> >> >
> >> >
> >> > > On Apr 21, 2017, at 3:23 PM, Baker, Joseph <bakerj.tcnj.edu> wrote:
> >> > >
> >> > > $AMBERHOME/miniconda/bin
> >> >
> >> > Uhm, python 2.6 does not have context manger for tarfile. Can you use
> >> > miniconda python
> >> >
> >> > $AMBERHOME/miniconda/bin/python update_amber --upgrade
> >> >
> >> > (Or use amber.python which is alias of miniconda python).
> >> >
> >> > Hai
> >> > _______________________________________________
> >> > AMBER mailing list
> >> > AMBER.ambermd.org
> >> > http://lists.ambermd.org/mailman/listinfo/amber
> >> >
> >> _______________________________________________
> >> AMBER mailing list
> >> AMBER.ambermd.org
> >> http://lists.ambermd.org/mailman/listinfo/amber
> >>
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
>
> _______________________________________________
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Received on Fri Apr 21 2017 - 13:00:05 PDT
