What's your python version?
Hai Nguyen
> On Apr 21, 2017, at 2:41 PM, Baker, Joseph <bakerj.tcnj.edu> wrote:
>
> Hi all,
>
> I tried running ./update_amber --upgrade and get the following output
>
> [root.neon amber16]# ./update_amber --upgrade
> You are about to perform a major upgrade. This is NOT reversible.
>
> Do you wish to continue? (y/N) y
> Downloading updates for AmberTools 16
> Downloading AmberTools 16/update.21 (1.14 KB)
> Applying AmberTools 16/update.21
> Downloading updates for Amber 16
> Downloading Amber 16/update.7 (1.42 KB)
> Applying Amber 16/update.7
> If the upgrade attempt fails, or you have made any custom changes
> to the AmberTools source code, please download the AmberTools17
> tarball from http://ambermd.org/AmberTools17-get.html
>
> NOTE: This upgrade cannot be reversed!
> Downloading upgrade.patch.bz2 (2.49 MB)
> Downloading: [::::::::::::::::::::::::::::::::::::::::::::::::::] 100.0%
> Done.
> Attempting the upgrade. Please wait...
> Finalizing the upgrade
> Downloading Upgrade Finalizer (87.14 KB)
>
> Deleting old files
>
>
> Downloading the new files archive
>
> Downloading upgrade.tar.bz2 (61.85 MB)
> Downloading: [::::::::::::::::::::::::::::::::::::::::::::::::::] 100.0%
> Done.
> Traceback (most recent call last):
> File "./upgrade", line 1062, in <module>
> with tarfile.open(os.path.join('.', 'upgrade.tar.bz2'),'r:bz2') as tar:
> AttributeError: 'TarFile' object has no attribute '__exit__'
> Warning: Possible error detected in upgrade...
>
>
> And now there is a upgrade.tar.bz2 file hanging around in my $AMBERHOME
> directory, and starting cpptraj is still showing
>
> CPPTRAJ: Trajectory Analysis. V16.16
>
> I have not made any custom changes to the AmberTools source code.
>
> Thanks,
> Joe
>
> ------
> Joseph Baker, PhD
> Assistant Professor
> Department of Chemistry
> C101 Science Complex
> The College of New Jersey
> Ewing, NJ 08628
> Phone: (609) 771-3173
> Web: http://bakerj.pages.tcnj.edu/
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Received on Fri Apr 21 2017 - 12:30:02 PDT
