Hello,
I am using parmed to generate Amber prmtop from Charmm ff. However, it
doesn't give any output or error message. Here is my command line
chamber -top top_all36_lipid.rtf -param par_all36_lipid.prm -param
par_all36m_prot.prm -param par_all36_cgenff.prm -param par_all36_na.prm
-param par_all36_carb.prm -param ddm2.prm -toppar
toppar_water_ions_fixed.str -psf r-300-ion.psf -crd r-300-ion.pdb -box
199.5,196.6,198.64
previously I was using chamber without parmed, but it was complaining about
not finding nonbonded parameters. Does anybody know why I'm not getting an
output?
Thanks,
Sadegh
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Received on Wed Apr 05 2017 - 11:00:07 PDT
