On Wed, Apr 05, 2017, Thakur, Abhishek wrote:
>
> I want to know is there any way in amber by which I can measure the
> volume of binding site.
I don't know of any analysis inside the Amber suite that does this. Convert
your initial and final states to PDB-format files, and try POVME, or other
utilities you can find by doing a Google search on something like "volume
binding site"
...good luck....dac
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Received on Wed Apr 05 2017 - 12:30:02 PDT
