Hello Hai,
Sorry for the delayed response. Yes the compiler version is 4.1.2 as
you suggested. I will now update my compiler.
Thank you for all the help.
Regards,
Abhijeet Chowdhury
On 2/15/17, Hai Nguyen <nhai.qn.gmail.com> wrote:
> hi
>
> which compiler version you are using?
>
> gcc --version
>
> If it's too old (4.1?), you should upgrade your compiler:
>
>>= 4.4 seems working fine for AT16. Related topic:
> http://archive.ambermd.org/201606/0051.html
>
> PS: Since AmberTools 16 was released before GNU v>=6., so try something
> between 4.4 and v5.
>
> Hai
>
> On Wed, Feb 15, 2017 at 12:27 PM, ABHIJEET CHOWDHURY <
> f2013854.pilani.bits-pilani.ac.in> wrote:
>
>> Hello,
>>
>> Yeah, I got the file and now it works. Thank you. Now I have a different
>> problem as soon as I try to compile AMBER it gives the following error:
>>
>> In file qm2_extern_gau_module.F90:357
>>
>> intrinsic :: is_iostat_end1
>> Error: Intrinsic at (1) does not exist
>> In file qm2_extern_gau_module.F90:476
>>
>> done = is_iostat_end(ios) .or. (i == 3)
>> 1
>> Error: Function 'is_iostat_end' at (1) has no IMPLICIT type
>> In file qm2_extern_gau_module.F90:492
>>
>> done = done .or. is_iostat_end(ios)
>> 1
>> Error: Function 'is_iostat_end' at (1) has no IMPLICIT type
>> make[2]: *** [qm2_extern_gau_module.o] Error 1
>> make[2]: Leaving directory
>> `/home/divya/AMBER16/amber16/AmberTools/src/sander'
>> make[1]: *** [serial] Error 2
>> make[1]: Leaving directory `/home/divya/AMBER16/amber16/AmberTools/src'
>> make: *** [install] Error 2
>>
>> Regards,
>> Abhijeet Chowdhury
>>
>>
>>
>>
>>
>> On Wed, Feb 15, 2017 at 6:56 PM, Hai Nguyen <nhai.qn.gmail.com> wrote:
>>
>> > Hi,
>> >
>> > can you open the AmberTools/src/configure_python file, looking for the
>> > line
>> >
>> > wget https://repo.continuum.io/miniconda/Miniconda${version}
>> > -latest-Linux-x86_64.sh
>> >
>> > and change it to
>> >
>> > wget https://repo.continuum.io/miniconda/Miniconda${version}
>> > -latest-Linux-x86_64.sh --no-check-certificate
>> >
>> > Hai
>> >
>> > On Wed, Feb 15, 2017 at 8:13 AM, ABHIJEET CHOWDHURY <
>> > f2013854.pilani.bits-pilani.ac.in> wrote:
>> >
>> > > Dear users,
>> > >
>> > > While installing AMBER 16, I am having the following problem as I try
>> > > to run the configure file.
>> > >
>> > > Downloading Python 2.7 Miniconda
>> > > Detected Linux kernel. Downloading the Linux installer
>> > > Downloading the latest Miniconda distribution
>> > > Detected 64-bit Linux
>> > > --18:14:56-- https://repo.continuum.io/miniconda/Miniconda-latest-
>> > > Linux-x86_64.sh
>> > > Resolving repo.continuum.io... 104.16.18.10, 104.16.19.10,
>> > > 2400:cb00:2048:1::6810:120a, ...
>> > > Connecting to repo.continuum.io|104.16.18.10|:443... connected.
>> > > ERROR: cannot verify repo.continuum.io's certificate, issued by
>> > > `/C=US/O=thawte, Inc./CN=thawte SSL CA - G2':
>> > > Unable to locally verify the issuer's authority.
>> > > To connect to repo.continuum.io insecurely, use
>> > `--no-check-certificate'.
>> > > Unable to establish SSL connection.
>> > > Problem installing Miniconda... see error above.
>> > > Configure failed due to the errors above!
>> > >
>> > > I know it's not directly related to AMBER but if someone has some
>> > > suggestions, it would be helpful.
>> > >
>> > > Regards,
>> > > Abhijeet Chowdhury
>> > >
>> > > _______________________________________________
>> > > AMBER mailing list
>> > > AMBER.ambermd.org
>> > > http://lists.ambermd.org/mailman/listinfo/amber
>> > >
>> > _______________________________________________
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>> >
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Received on Fri Feb 17 2017 - 05:00:03 PST
