[AMBER] Fwd: some clues about yacc errors on OLCF rhea

From: Ada Sedova <ada.a.sedova.gmail.com>
Date: Wed, 18 Jan 2017 13:19:24 -0500

Hi, I have not received any responses about this problem since my last
reply. There is also another reply from me in a previous thread which
provided the requested logfiles and other info.

I am still trying (unsuccessfully) to solve this problem. I think I can be
pretty confident that the mpi make is rebuilding the byacc binary, however,
and that is what is causing errors.



---------- Forwarded message ----------
From: Ada Sedova <ada.a.sedova.gmail.com>
Date: Tue, Jan 17, 2017 at 2:42 PM
Subject: some clues about yacc errors on OLCF rhea
To: david.case.rutgers.edu

Hi David,

I'm guessing you guys are building yacc as part of the amber build. When I

/ccs/home/adaa/AMBER/amber14/bin/yacc -v -d cifparse.y

from the serial-build folder,

I get no error.

However, when I run the same command from the parallel build folder,

I get the same error that crashes the make install:

bash-4.1$ /ccs/home/adaa/AMBER/AMBER_PARALLEL/amber14/bin/yacc -v -d

yacc:39196 terminated with signal 11 at PC=40abac SP=7ffed5cb7530.






Also. when I try it using the system yacc in the parallel folder, I get no

-bash-4.1$ which yacc


-bash-4.1$ /usr/bin/yacc -v -d cifparse.y

(no error)

I'm guessing that building byacc with mpicc is incompatible with our
system, and I should try to get the cifparse workflow to use the system
yacc, if that would work.

What do you think?

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Received on Wed Jan 18 2017 - 10:30:03 PST
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