[AMBER] csh to bash

From: Thakur, Abhishek <axt651.miami.edu>
Date: Thu, 12 Jan 2017 17:11:12 +0000

Hi everyone

I was running my production on csh but it was giving me some error. So I have tested same script of bash and it is running fine.

So I need some help in converting few lines of my script from csh to bash

# Set job name and current dir
set user = axt651
set jobname = PRMT1-PROD
set local = /projects/chem/ionic/abhi/M86K-F204D/prod

set amber = $AMBERHOME/bin/pmemd.cuda

# Copy AMBER files to scratch dir
mkdir /scratch/projects/prmt/$user
mkdir /scratch/projects/prmt/$user/$jobname
cd /scratch/projects/prmt/$user/$jobname

Thanking you,

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Received on Thu Jan 12 2017 - 09:30:02 PST
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