In amber 16 manual page 26, python 2.7 and later version is required and
the manual contains nothing about python 3;
From my knowledge, python 2 and python 3 are two different schemes and they
developed separately, athough some simply python scripts can run properly
both with python 2 and python 3;
jing
On Wed, Jan 4, 2017 at 8:25 PM, Hai Nguyen <nhai.qn.gmail.com> wrote:
> On Wed, Jan 4, 2017 at 1:13 PM, Huang Jing <jing.huang8911.gmail.com>
> wrote:
>
> > Possibly your default python is python3 and the MMPBSA.py is written in
> > python2.if you have Python version 3, the utility 2to3 must be present to
> > translate the code into Python 3 syntax;
> > Following is the details about MMPBSA.py script
> > http://ambermd.org/tutorials/advanced/tutorial3/py_script/
> > files/MMPBSA_Python_Manual.pdf
> > jing
> >
>
> all Python programs in AmberTools will work with both Python 2 and 3. User
> needs not to use anything else to convert.
> You just need to recompile AmberTools.
> Please double-check the Python section in Amber 16 manual.
>
> Hai
>
>
> >
> > On Wed, Jan 4, 2017 at 8:00 PM, Hai Nguyen <nhai.qn.gmail.com> wrote:
> >
> > > make distclean and recompile Amber/AmberTools will help.
> > >
> > > PS0: "not working" is not very helpful info.
> > > PS1: We've updated info for Mac OS here (much simpler):
> > > http://ambermd.org/ubuntu.html
> > > PS2: per Python version, I suggest you let AMBER install the Miniconda
> > > distribution for you during installation process.
> > >
> > > .Dave: from the link: Mac OS on "ubuntu" link. Should we move?
> > > Hai
> > >
> > > On Wed, Jan 4, 2017 at 12:54 PM, erik rp zuiderweg <zuiderwe.umich.edu
> >
> > > wrote:
> > >
> > > > My older MMPBSA calculations are not working any more, likely due to
> > my
> > > > OS “up”grade.
> > > > Can anyone advise what versions of Amber, Ambertools, MMPBSA
> > > > and what versions of Python
> > > > are compatible with Mac OS 10.11.6 (El Capitan) ?
> > > >
> > > >
> > > > Thanks so much!
> > > >
> > > >
> > > > Erik Zuiderweg
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Received on Wed Jan 04 2017 - 11:00:02 PST
