On Wed, Jan 4, 2017 at 1:13 PM, Huang Jing <jing.huang8911.gmail.com> wrote:
> Possibly your default python is python3 and the MMPBSA.py is written in
> python2.if you have Python version 3, the utility 2to3 must be present to
> translate the code into Python 3 syntax;
> Following is the details about MMPBSA.py script
> http://ambermd.org/tutorials/advanced/tutorial3/py_script/
> files/MMPBSA_Python_Manual.pdf
> jing
>
all Python programs in AmberTools will work with both Python 2 and 3. User
needs not to use anything else to convert.
You just need to recompile AmberTools.
Please double-check the Python section in Amber 16 manual.
Hai
>
> On Wed, Jan 4, 2017 at 8:00 PM, Hai Nguyen <nhai.qn.gmail.com> wrote:
>
> > make distclean and recompile Amber/AmberTools will help.
> >
> > PS0: "not working" is not very helpful info.
> > PS1: We've updated info for Mac OS here (much simpler):
> > http://ambermd.org/ubuntu.html
> > PS2: per Python version, I suggest you let AMBER install the Miniconda
> > distribution for you during installation process.
> >
> > .Dave: from the link: Mac OS on "ubuntu" link. Should we move?
> > Hai
> >
> > On Wed, Jan 4, 2017 at 12:54 PM, erik rp zuiderweg <zuiderwe.umich.edu>
> > wrote:
> >
> > > My older MMPBSA calculations are not working any more, likely due to
> my
> > > OS “up”grade.
> > > Can anyone advise what versions of Amber, Ambertools, MMPBSA
> > > and what versions of Python
> > > are compatible with Mac OS 10.11.6 (El Capitan) ?
> > >
> > >
> > > Thanks so much!
> > >
> > >
> > > Erik Zuiderweg
> > > _______________________________________________
> > > AMBER mailing list
> > > AMBER.ambermd.org
> > > http://lists.ambermd.org/mailman/listinfo/amber
> > >
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Wed Jan 04 2017 - 10:30:03 PST
