Shouldn't matter either way, but it doesn't hurt to autoimage.
-Dan
On Tue, Dec 13, 2016 at 8:48 AM, A kS <aks25121986.gmail.com> wrote:
> Respected Sir,
>
> Thank you very much for your reply. I am little confused with another issue,
> Can I use autoimaged trajectory for this?
>
> Sorry to bother you again and again.
>
> Regards.
>
> On Tue, Dec 13, 2016 at 7:14 PM, Daniel Roe <daniel.r.roe.gmail.com> wrote:
>>
>> The 'minimage' command of cpptraj will calculate the minimum non-self
>> imaged distance between atoms. See the manual for details.
>>
>> -Dan
>>
>> On Tue, Dec 13, 2016 at 8:39 AM, A kS <aks25121986.gmail.com> wrote:
>> > Dear AMBER users,
>> >
>> > I am a new user of AMBER. It will be great if anyone could give me an
>> > idea
>> > about how can I calculate the minimum distance between images of solute
>> > during the simulation.
>> >
>> > If such calculation is possible then can I use autoimaged trajectory for
>> > this?
>> >
>> > Looking forward for your reply.
>> >
>> > Regards
>> > _______________________________________________
>> > AMBER mailing list
>> > AMBER.ambermd.org
>> > http://lists.ambermd.org/mailman/listinfo/amber
>>
>>
>>
>> --
>> -------------------------
>> Daniel R. Roe
>> Laboratory of Computational Biology
>> National Institutes of Health, NHLBI
>> 5635 Fishers Ln, Rm T900
>> Rockville MD, 20852
>> https://www.lobos.nih.gov/lcb
>>
>> _______________________________________________
>> AMBER mailing list
>> AMBER.ambermd.org
>> http://lists.ambermd.org/mailman/listinfo/amber
>
>
--
-------------------------
Daniel R. Roe
Laboratory of Computational Biology
National Institutes of Health, NHLBI
5635 Fishers Ln, Rm T900
Rockville MD, 20852
https://www.lobos.nih.gov/lcb
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Received on Tue Dec 13 2016 - 06:00:05 PST
