Respected Sir,
Now it is clear to me. Thank you very much for this help.
Regards
On Tue, Dec 13, 2016 at 7:21 PM, Daniel Roe <daniel.r.roe.gmail.com> wrote:
> Shouldn't matter either way, but it doesn't hurt to autoimage.
>
> -Dan
>
> On Tue, Dec 13, 2016 at 8:48 AM, A kS <aks25121986.gmail.com> wrote:
> > Respected Sir,
> >
> > Thank you very much for your reply. I am little confused with another
> issue,
> > Can I use autoimaged trajectory for this?
> >
> > Sorry to bother you again and again.
> >
> > Regards.
> >
> > On Tue, Dec 13, 2016 at 7:14 PM, Daniel Roe <daniel.r.roe.gmail.com>
> wrote:
> >>
> >> The 'minimage' command of cpptraj will calculate the minimum non-self
> >> imaged distance between atoms. See the manual for details.
> >>
> >> -Dan
> >>
> >> On Tue, Dec 13, 2016 at 8:39 AM, A kS <aks25121986.gmail.com> wrote:
> >> > Dear AMBER users,
> >> >
> >> > I am a new user of AMBER. It will be great if anyone could give me an
> >> > idea
> >> > about how can I calculate the minimum distance between images of
> solute
> >> > during the simulation.
> >> >
> >> > If such calculation is possible then can I use autoimaged trajectory
> for
> >> > this?
> >> >
> >> > Looking forward for your reply.
> >> >
> >> > Regards
> >> > _______________________________________________
> >> > AMBER mailing list
> >> > AMBER.ambermd.org
> >> > http://lists.ambermd.org/mailman/listinfo/amber
> >>
> >>
> >>
> >> --
> >> -------------------------
> >> Daniel R. Roe
> >> Laboratory of Computational Biology
> >> National Institutes of Health, NHLBI
> >> 5635 Fishers Ln, Rm T900
> >> Rockville MD, 20852
> >> https://www.lobos.nih.gov/lcb
> >>
> >> _______________________________________________
> >> AMBER mailing list
> >> AMBER.ambermd.org
> >> http://lists.ambermd.org/mailman/listinfo/amber
> >
> >
>
>
>
> --
> -------------------------
> Daniel R. Roe
> Laboratory of Computational Biology
> National Institutes of Health, NHLBI
> 5635 Fishers Ln, Rm T900
> Rockville MD, 20852
> https://www.lobos.nih.gov/lcb
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
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Received on Tue Dec 13 2016 - 06:30:02 PST
