Re: [AMBER] Untwisting a molecule

From: Bill Ross <ross.cgl.ucsf.edu>
Date: Sun, 11 Dec 2016 18:31:41 -0800

Not that I know of, and I looked into it for this by the way:

   http://phobrain.com/pr/home/mol.html

Bill

On 12/11/16 6:15 PM, The Cromicus Productions wrote:
> I was thinking on fixing the first and last base pairs and using an
> external force in order to make the helix become a stair. Is it possible to
> define external forces?
>
> On Sun, Dec 11, 2016 at 9:12 PM, Bill Ross <ross.cgl.ucsf.edu> wrote:
>
>> E.g. high temperature is pretty easy to accomplish.
>>
>> Bill
>>
>>
>> On 12/11/16 6:05 PM, David A Case wrote:
>>> On Sun, Dec 11, 2016, The Cromicus Productions wrote:
>>>> I want to simulate the untwisting of a DNA molecule. Is this possible
>> with
>>>> AMBER?
>>> You would have to decide what physical or artifical forces were driving
>> the
>>> untwisting. The model those forces.
>>>
>>> ....dac
>>>
>>>
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Received on Sun Dec 11 2016 - 19:00:03 PST
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