Below is the modufile loaded for the intel compiler ... So, it looks
like its the CPATH variable ...
Vlad
#%Module -*- tcl -*-
##
## modulefile
##
proc ModulesHelp { } {
puts stderr "\tAdds Intel compilers to your environment variables,"
}
module-whatis "adds Intel compilers to your environment variables"
set root
/cm/shared/apps/intel/compilers_and_libraries/2016.3.210
prepend-path PATH $root/mpi/intel64/bin
prepend-path PATH $root/bin/intel64
prepend-path LD_LIBRARY_PATH $root/mpi/intel64/lib
prepend-path LD_LIBRARY_PATH $root/compiler/lib/intel64
prepend-path LIBRARY_PATH $root/compiler/lib/intel64
prepend-path MIC_LD_LIBRARY_PATH $root/compiler/lib/mic
prepend-path MIC_LIBRARY_PATH $root/compiler/lib/mic
prepend-path CPATH $root/compiler/include
prepend-path CPATH $root/compiler/include/intel64
prepend-path NLSPATH $root/compiler/lib/intel64/locale/%l_%t/%N
prepend-path INTEL_LICENSE_FILE /cm/shared/licenses/intel
On 10/18/2016 02:49 PM, David A Case wrote:
> On Mon, Oct 17, 2016, Vlad Cojocaru wrote:
>> The environment for the intel compiler is loaded on top of the basis
>> which includes gcc 4.8.5 ... This means that the list of directories to
>> search for .h files (I called these "include" directories or "include
>> list") begins with those from intel ("last" loaded)... Then, the gcc
>> compiler will find the intel .h files first and will try to use those
>> ... I guess this is what is happening ....
> Understood, but where is this list stored? In some environment variable? The
> gcc invocation for FEW has no "-I" flag, so gcc should be looking in standard
> paths:
>
> https://gcc.gnu.org/onlinedocs/cpp/Search-Path.html
>
> Further, installation of the Intel compiler suite should not disable gcc.
> I suspect that there is something quite odd about your setup.
>
> That said, Amber should be repecting the CC variable requested at configure
> time.
>
> ....dac
>
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
--
Dr. Vlad Cojocaru
Computational Structural Biology Laboratory
Department of Cell and Developmental Biology
Max Planck Institute for Molecular Biomedicine
Röntgenstrasse 20, 48149 Münster, Germany
Tel: +49-251-70365-324; Fax: +49-251-70365-399
Email: vlad.cojocaru[at]mpi-muenster.mpg.de
http://www.mpi-muenster.mpg.de/43241/cojocaru
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Tue Oct 18 2016 - 06:30:02 PDT
