Re: [AMBER] [AMBER} NetCDF installation problem on mac OS X El Capitan

From: Jason Swails <jason.swails.gmail.com>
Date: Fri, 19 Aug 2016 08:51:35 -0400

What happens if you run the fftw configure script by hand?

--
Jason M. Swails 
> On Aug 18, 2016, at 5:49 PM, mirko hennig <mirkohennig.yahoo.com> wrote:
> 
> thanks Jason.
> response to make in a terminal is:
> make: *** No targets specified and no makefile found.  Stop.
> 
> I've tried a couple more things and what you're suggesting makes sense (that some input would be required yet it's non-interactive)
> I saw that you can use a -nofftw3 flag, so I've tried that.... 
> 
> ./configure -macAccelerate -nofftw3 --with-netcdf /opt/local gnu
> 
> now gets me to:
>  
> Skipping configuration of FFTW3
> Configuring MTK++ (may be time-consuming)...
> 
> and again, you can wait and wait and wait some more. 
> the mtkpp_config.log file looks exactly like the netcdf log did before, last line reads:
> checking whether make sets $(MAKE)... 
> 
> however, this time (after manually terminating the process) configure actually finishes:
> 
> ^C    Warning: MTK++ configure returned 1
>     MTK++ configure failed!  Check the mtkpp_config.log file
>     in the /Users/mirko/my_CNS/Amber/amber14/AmberTools/src directory.
>     MTK++ will not be built alongside AmberTools.
>  
> The configuration file, config.h, was successfully created.
> 
> I've attached the config.h file in case it may be useful. Desperate as I am, I've tried to execute 'make install'; all looks ok for a while until it hits:
> 
> Installing /Users/mirko/my_CNS/Amber/amber14/AmberTools/src/FEW/additional_libs/PerlMol/share/man/man3/Math::VectorReal.3pm
> Installing /Users/mirko/my_CNS/Amber/amber14/AmberTools/src/FEW/additional_libs/PerlMol/share/man/man3/Parse::Yapp.3
> Installing /Users/mirko/my_CNS/Amber/amber14/AmberTools/src/FEW/additional_libs/PerlMol/share/man/man3/Statistics::Regression.3pm
> Darwin_15.6.0
> Darwin_15.6.0
> 
> the latter 'Darwin_15.6.0' is then repeated endlessly until one kills make manually. 
> ^Cmake[3]: *** [doc_site_install] Interrupt: 2
> make[2]: *** [install] Interrupt: 2
> make[1]: *** [serial] Interrupt: 2
> Darwin_15.6.0
> make: *** [install] Interrupt: 2
>  
> Btw, I had also downloaded AmberTools16 at some point, but everything is exactly the same
> best
> Mirko
> 
> From: Jason Swails <jason.swails.gmail.com>
> To: mirko hennig <mirkohennig.yahoo.com>; AMBER Mailing List <amber.ambermd.org> 
> Cc: "david.case.rutgers.edu" <david.case.rutgers.edu>
> Sent: Thursday, August 18, 2016 5:18 AM
> Subject: Re: [AMBER] [AMBER} NetCDF installation problem on mac OS X El Capitan
> 
> I've seen this happen before when Xcode opens up a dialog (asking you to accept the EULA or something of that ilk).  Since it's non-interactive, configure just sits there for ages waiting for user input that never comes.
> 
> Try just typing "make" in an open terminal and paste the response you get here.
> 
> HTH,
> Jason
> 
> 
> On Tue, Aug 16, 2016 at 10:53 AM, mirko hennig <mirkohennig.yahoo.com> wrote:
> unfortunately, not much information to work with...
> >Any clue from the $AMBERHOME/AmberTools/src/ fftw3_config.log file?  Does
> >it end with a line like this?
> 
> >checking whether make sets $(MAKE)...
> 
> fftw3_config.log is an empty file:-rw-r--r--    1 mirko  staff       0 Aug 16 07:12 fftw3_config.logdrwxr-xr-x   60 mirko  staff    2040 Aug 16 07:12 .drwxr-xr-x.  41 mirko  staff    1394 Aug 16 07:13 fftw-3.3
> many thanks-mirko
> 
> 
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> -- 
> Jason M. Swails
> 
> 
> <config.h>
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Received on Fri Aug 19 2016 - 06:00:03 PDT
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