Custom Search
-- Jason M. Swails > On Aug 18, 2016, at 5:49 PM, mirko hennig <mirkohennig.yahoo.com> wrote: > > thanks Jason. > response to make in a terminal is: > make: *** No targets specified and no makefile found. Stop. > > I've tried a couple more things and what you're suggesting makes sense (that some input would be required yet it's non-interactive) > I saw that you can use a -nofftw3 flag, so I've tried that.... > > ./configure -macAccelerate -nofftw3 --with-netcdf /opt/local gnu > > now gets me to: > > Skipping configuration of FFTW3 > Configuring MTK++ (may be time-consuming)... > > and again, you can wait and wait and wait some more. > the mtkpp_config.log file looks exactly like the netcdf log did before, last line reads: > checking whether make sets $(MAKE)... > > however, this time (after manually terminating the process) configure actually finishes: > > ^C Warning: MTK++ configure returned 1 > MTK++ configure failed! Check the mtkpp_config.log file > in the /Users/mirko/my_CNS/Amber/amber14/AmberTools/src directory. > MTK++ will not be built alongside AmberTools. > > The configuration file, config.h, was successfully created. > > I've attached the config.h file in case it may be useful. Desperate as I am, I've tried to execute 'make install'; all looks ok for a while until it hits: > > Installing /Users/mirko/my_CNS/Amber/amber14/AmberTools/src/FEW/additional_libs/PerlMol/share/man/man3/Math::VectorReal.3pm > Installing /Users/mirko/my_CNS/Amber/amber14/AmberTools/src/FEW/additional_libs/PerlMol/share/man/man3/Parse::Yapp.3 > Installing /Users/mirko/my_CNS/Amber/amber14/AmberTools/src/FEW/additional_libs/PerlMol/share/man/man3/Statistics::Regression.3pm > Darwin_15.6.0 > Darwin_15.6.0 > > the latter 'Darwin_15.6.0' is then repeated endlessly until one kills make manually. > ^Cmake[3]: *** [doc_site_install] Interrupt: 2 > make[2]: *** [install] Interrupt: 2 > make[1]: *** [serial] Interrupt: 2 > Darwin_15.6.0 > make: *** [install] Interrupt: 2 > > Btw, I had also downloaded AmberTools16 at some point, but everything is exactly the same > best > Mirko > > From: Jason Swails <jason.swails.gmail.com> > To: mirko hennig <mirkohennig.yahoo.com>; AMBER Mailing List <amber.ambermd.org> > Cc: "david.case.rutgers.edu" <david.case.rutgers.edu> > Sent: Thursday, August 18, 2016 5:18 AM > Subject: Re: [AMBER] [AMBER} NetCDF installation problem on mac OS X El Capitan > > I've seen this happen before when Xcode opens up a dialog (asking you to accept the EULA or something of that ilk). Since it's non-interactive, configure just sits there for ages waiting for user input that never comes. > > Try just typing "make" in an open terminal and paste the response you get here. > > HTH, > Jason > > > On Tue, Aug 16, 2016 at 10:53 AM, mirko hennig <mirkohennig.yahoo.com> wrote: > unfortunately, not much information to work with... > >Any clue from the $AMBERHOME/AmberTools/src/ fftw3_config.log file? Does > >it end with a line like this? > > >checking whether make sets $(MAKE)... > > fftw3_config.log is an empty file:-rw-r--r-- 1 mirko staff 0 Aug 16 07:12 fftw3_config.logdrwxr-xr-x 60 mirko staff 2040 Aug 16 07:12 .drwxr-xr-x. 41 mirko staff 1394 Aug 16 07:13 fftw-3.3 > many thanks-mirko > > > ______________________________ _________________ > AMBER mailing list > AMBER.ambermd.org > http://lists.ambermd.org/ mailman/listinfo/amber > > > > > ______________________________ _________________ > AMBER mailing list > AMBER.ambermd.org > http://lists.ambermd.org/ mailman/listinfo/amber > > > > > -- > Jason M. Swails > > > <config.h> _______________________________________________ AMBER mailing list AMBER.ambermd.org http://lists.ambermd.org/mailman/listinfo/amberReceived on Fri Aug 19 2016 - 06:00:03 PDT