[AMBER] [AMBER} NetCDF installation problem on mac OS X El Capitan

From: mirko hennig <mirkohennig.yahoo.com>
Date: Mon, 15 Aug 2016 16:26:56 +0000 (UTC)

Dear allI'm still trying to install Ambertools15 and Amber14 on a Macbook pro (OS X 10.11.6) and continue to have issues when executing ./configure w/ and w/o -macAccelerate using either gnu or clang compilers.
Specifically, the installation hangs when configuring NetCDF:
Checking NetCDF... Using bundled NetCDF library. Starting NetCDF build. Configuring NetCDF C interface (may be time-consuming)...
meaning that ./configure never finishes (no errors, no prompt after hours and hours of waiting which has been described before by myself and on Mon Nov 30 2015 "mac hangs when compile amber tools on el capitan" by  YY) but rather has to be manually killed. Every test before like gcc, g++, gfortran etc passes.
I have attached a txt file illustrating the outputs of the corresponding netcdf_config.log and the gcc -v output.
the netcdf versions that appear in ~/amber14/AmberTools/src arenetcdf-4.3.0 andnetcdf-fortran-4.2
'port list installed active' returnsnetcdf                         .4.4.1          science/netcdfnetcdf-fortran                 @4.4.3          science/netcdf-fortran
what really confuses me is the fact that 'port list installed INACTIVE' lists the same versions (netcdf-4.4.1 and netcdf-fortran-4.4.3) and the latter netcdf's are only found under e.g:[Mirkos-MacBook-Pro:/opt/local] mirko% find . -name netcdf-fortran -print./var/macports/distfiles/netcdf-fortran./var/macports/software/netcdf-fortran./var/macports/sources/rsync.macports.org/release/tarballs/ports/science/netcdf-fortranwhich makes using the '--with-netcdf' flag difficult.any help would be greatly appreciatedmany thanks-mirko

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Received on Mon Aug 15 2016 - 09:30:04 PDT
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