Thanks so much Karolina!
All the best,
James
2016-05-10 11:36 GMT+02:00 Karolina Markowska <markowska.kar.gmail.com>:
> Hi James!
>
> You don't need an inpcrd file to load trajectories to VMD, you need the
> prmtop file.
> The command I use for that is:
> vmd -parm7 *.prmtop -netcdf trajectory.nc
>
> Have a nice day!
> Karolina
>
>
> 2016-05-10 11:24 GMT+02:00 James Starlight <jmsstarlight.gmail.com>:
>
>> Dear Amber users!
>>
>> I kindly ask to remind me whether is possible to load in vmd both
>> netcdf trajectory and amber parm7 or inpcrd file (instead of pdb
>> coordinates) to see the visualization of the trajectory "on the fly"
>> using one line terminal command? If it possible what flags should be
>> provided for VMD there ?
>>
>> Thanks!
>>
>> James
>>
>> _______________________________________________
>> AMBER mailing list
>> AMBER.ambermd.org
>> http://lists.ambermd.org/mailman/listinfo/amber
>>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Tue May 10 2016 - 04:30:03 PDT
