Hi,
If you want frames extracted at regular intervals you can use cpptraj
and 'trajin' with an offset argument. So for example if you've written
frames every ps and want frames every 5 ns you would use cpptraj input
like:
parm myparm.parm7
trajin mytraj.nc 1 last 5000
trajout MyFrames.pdb multi
Hope this helps,
-Dan
On Thu, Apr 14, 2016 at 8:02 PM, Luis Esteban <lugece.hotmail.com> wrote:
> Dear user amber
> I do a simulation of 100 ns in amber 14, right now I want to get different conformations at different times of the simulation and save pdb format.
> example
> conformations 0, 5, 10, 15, 20 ns etc,
> best regards
> Saludos
> LETL
>
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--
-------------------------
Daniel R. Roe, PhD
Department of Medicinal Chemistry
University of Utah
30 South 2000 East, Room 307
Salt Lake City, UT 84112-5820
http://home.chpc.utah.edu/~cheatham/
(801) 587-9652
(801) 585-6208 (Fax)
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Received on Fri Apr 15 2016 - 09:00:05 PDT
