Thanks DAn
I will try whit this
Saludos
LETL
> Date: Fri, 15 Apr 2016 09:42:17 -0600
> From: daniel.r.roe.gmail.com
> To: amber.ambermd.org
> Subject: Re: [AMBER] How can I extract PDB files from a molecular dynamics simulation
>
> Hi,
>
> If you want frames extracted at regular intervals you can use cpptraj
> and 'trajin' with an offset argument. So for example if you've written
> frames every ps and want frames every 5 ns you would use cpptraj input
> like:
>
> parm myparm.parm7
> trajin mytraj.nc 1 last 5000
> trajout MyFrames.pdb multi
>
> Hope this helps,
>
> -Dan
>
> On Thu, Apr 14, 2016 at 8:02 PM, Luis Esteban <lugece.hotmail.com> wrote:
> > Dear user amber
> > I do a simulation of 100 ns in amber 14, right now I want to get different conformations at different times of the simulation and save pdb format.
> > example
> > conformations 0, 5, 10, 15, 20 ns etc,
> > best regards
> > Saludos
> > LETL
> >
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> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
>
>
>
> --
> -------------------------
> Daniel R. Roe, PhD
> Department of Medicinal Chemistry
> University of Utah
> 30 South 2000 East, Room 307
> Salt Lake City, UT 84112-5820
> http://home.chpc.utah.edu/~cheatham/
> (801) 587-9652
> (801) 585-6208 (Fax)
>
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Received on Sat Apr 16 2016 - 17:30:03 PDT
