On Tue, Apr 12, 2016, Sreemol G wrote:
> Can anyone explain what this 2.0 :2 denotes in this command
> "rms reference mass out 02_03.rms time 2.0 :2"
The "2.0" is an argument to the "time" keyword, and specifies the time between
snapshots in the trajectory file. This can be in whatever units you choose.
The ":2" is a mask, specifying that you want to do an RMS fit on the atoms in
residue 2 (only). This is unlikely to be what you want. As Dan pointed
out earlier, you probably want a mask that looks something like
:1-177.C,CA,N.
...dac
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Received on Tue Apr 12 2016 - 05:00:04 PDT
