Re: [AMBER] how to prepare a pdb file of a protein being phosphorylated at specific residues

From: Mijiddorj Batsaikhan <b.mijiddorj.gmail.com>
Date: Mon, 4 Apr 2016 13:53:13 +0900

If you understand steps and language on following links

https://sites.google.com/site/moleculdesign/homework/phosphoprotein/1

you should use commands.

On Mon, Apr 4, 2016 at 12:15 PM, 欧阳艳华 <15901283893.163.com> wrote:

> Hi, I would like to simulate the phosphorylated form of a protein for whom
> I only have a pdb of the non-phosphorylated form (eg. serine to
> phosphoserine). Now I only have the protein sequence in a fasta format
> file, how do I build a model with being phophorylated at specific residues.
> Is there any tutorials available that may shed some light on how to do
> this?
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Received on Sun Apr 03 2016 - 22:00:05 PDT
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