[AMBER] how to prepare a pdb file of a protein being phosphorylated at specific residues

From: 欧阳艳华 <15901283893.163.com>
Date: Mon, 4 Apr 2016 11:15:03 +0800

Hi, I would like to simulate the phosphorylated form of a protein for whom I only have a pdb of the non-phosphorylated form (eg. serine to phosphoserine). Now I only have the protein sequence in a fasta format file, how do I build a model with being phophorylated at specific residues. Is there any tutorials available that may shed some light on how to do this?
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Received on Sun Apr 03 2016 - 20:30:03 PDT