Re: [AMBER] how to prepare a pdb file of a protein being phosphorylated at specific residues

From: YanhuaOuyang <15901283893.163.com>
Date: Mon, 4 Apr 2016 15:06:29 +0800

Thanks!
> 在 2016年4月4日,下午12:53,Mijiddorj Batsaikhan <b.mijiddorj.gmail.com> 写道:
>
> If you understand steps and language on following links
>
> https://sites.google.com/site/moleculdesign/homework/phosphoprotein/1
>
> you should use commands.
>
> On Mon, Apr 4, 2016 at 12:15 PM, 欧阳艳华 <15901283893.163.com> wrote:
>
>> Hi, I would like to simulate the phosphorylated form of a protein for whom
>> I only have a pdb of the non-phosphorylated form (eg. serine to
>> phosphoserine). Now I only have the protein sequence in a fasta format
>> file, how do I build a model with being phophorylated at specific residues.
>> Is there any tutorials available that may shed some light on how to do
>> this?
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>>
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Received on Mon Apr 04 2016 - 00:30:03 PDT
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