Re: [AMBER] Dihedral angle values from .mdcrd file

From: Vasantha Kumar <vin.vasanth.gmail.com>
Date: Wed, 2 Mar 2016 20:18:11 +0100

Dear Carlos and Dear Dan

thank you so much for your suggestions...

thank you...

with best wishes

Vince

2016-03-02 18:49 GMT+01:00 Daniel Roe <daniel.r.roe.gmail.com>:

> Hi,
>
> Check out the 'hist' or 'kde' command in cpptraj.
>
> -Dan
>
> On Wed, Mar 2, 2016 at 4:47 AM, Vasantha Kumar <vin.vasanth.gmail.com>
> wrote:
> > Dear AMBER users
> >
> > I know how to extract the dihedral angles variation vs frames or
> simulation
> > time, is there is a way to extract dihedral angle vlaues as peaks similar
> > to Gaussian peak as a figure in the attachment.
> >
> > thanks in advance..
> >
> > with best wishes
> >
> > Vince
> >
> > [image: Inline image 2]
> >
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> > AMBER.ambermd.org
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> >
>
>
>
> --
> -------------------------
> Daniel R. Roe, PhD
> Department of Medicinal Chemistry
> University of Utah
> 30 South 2000 East, Room 307
> Salt Lake City, UT 84112-5820
> http://home.chpc.utah.edu/~cheatham/
> (801) 587-9652
> (801) 585-6208 (Fax)
>
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Received on Wed Mar 02 2016 - 11:30:05 PST
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