Re: [AMBER] Dihedral angle values from .mdcrd file

From: Daniel Roe <daniel.r.roe.gmail.com>
Date: Wed, 2 Mar 2016 10:49:16 -0700

Hi,

Check out the 'hist' or 'kde' command in cpptraj.

-Dan

On Wed, Mar 2, 2016 at 4:47 AM, Vasantha Kumar <vin.vasanth.gmail.com> wrote:
> Dear AMBER users
>
> I know how to extract the dihedral angles variation vs frames or simulation
> time, is there is a way to extract dihedral angle vlaues as peaks similar
> to Gaussian peak as a figure in the attachment.
>
> thanks in advance..
>
> with best wishes
>
> Vince
>
> [image: Inline image 2]
>
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>



-- 
-------------------------
Daniel R. Roe, PhD
Department of Medicinal Chemistry
University of Utah
30 South 2000 East, Room 307
Salt Lake City, UT 84112-5820
http://home.chpc.utah.edu/~cheatham/
(801) 587-9652
(801) 585-6208 (Fax)
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Received on Wed Mar 02 2016 - 10:00:03 PST
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