Dear David
I also had same problem with AMBER 12+ AMBER tool 14
In my case I have located the the "pdb4amber" in the below directory
DIR is $AMBERHOME/amber14/AmberTools/src/amberlite/pdb4amber05
When I run ./pdb4amber it gives following error.
bash: ./pdb4amber: PYTHONEXE: bad interpreter: No such file or directory
thanks in advance..
Have a nice day!!!
Vince
On 19 January 2016 at 14:00, David A Case <david.case.rutgers.edu> wrote:
> On Tue, Jan 19, 2016, Elisa Pieri wrote:
>
> > Yes, I am sure, the file has that name and is contained in the
> > directory I'm working in.
> >
> > >> elisa.agachon:~/tutorials$ /home/elisa/amber14/bin/pdb4amber -i
> > >> 1EMA.pdb -o gfp.pdb --dry --reduce
>
> Are you sure that all of the above command was on a single line?
>
> > >> Traceback (most recent call last):
> > >> File "/home/elisa/amber14/bin/pdb4amber", line 904, in <module>
> > >> opt.constantph, opt.mostpop, opt.reduce, opt.model)
> > >> File "/home/elisa/amber14/bin/pdb4amber", line 807, in run
> > >> stdout=subprocess.PIPE, stderr=subprocess.PIPE)
> > >> File "/usr/lib/python2.7/subprocess.py", line 710, in __init__
> > >> errread, errwrite)
> > >> File "/usr/lib/python2.7/subprocess.py", line 1327, in
> _execute_child
> > >> raise child_exception
> > >> OSError: [Errno 2] No such file or directory
>
> Please go to the $AMBERHOME/AmberTools/test/amberlite directory and type
>
> ./Run.pdb4amber
>
> Make sure that everything says PASSED. This will help us to decide if
> there
> is a problem with your installation.
>
> ...dac
>
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Tue Jan 19 2016 - 05:30:05 PST
