Re: [AMBER] python error when using pdb4amber

From: Jason Swails <>
Date: Tue, 19 Jan 2016 08:47:50 -0500

On Tue, Jan 19, 2016 at 8:29 AM, Vasantha Kumar <>

> Dear David
> I also had same problem with AMBER 12+ AMBER tool 14
> In my case I have located the the "pdb4amber" in the below directory
> DIR is $AMBERHOME/amber14/AmberTools/src/amberlite/pdb4amber05

​This is the raw source code. It gets processed and installed to
$AMBERHOME/bin. You need to use that copy.

> When I run ./pdb4amber it gives following error.
> bash: ./pdb4amber: PYTHONEXE: bad interpreter: No such file or directory

​PYTHONEXE gets replaced with the name of the actual Python interpreter.
This error is expected if you try to run pdb4amber from the source code


Jason M. Swails
Rutgers University
Postdoctoral Researcher
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Received on Tue Jan 19 2016 - 06:00:03 PST
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