On Tue, Jan 19, 2016, Elisa Pieri wrote:
> Yes, I am sure, the file has that name and is contained in the
> directory I'm working in.
>
> >> elisa.agachon:~/tutorials$ /home/elisa/amber14/bin/pdb4amber -i
> >> 1EMA.pdb -o gfp.pdb --dry --reduce
Are you sure that all of the above command was on a single line?
> >> Traceback (most recent call last):
> >> File "/home/elisa/amber14/bin/pdb4amber", line 904, in <module>
> >> opt.constantph, opt.mostpop, opt.reduce, opt.model)
> >> File "/home/elisa/amber14/bin/pdb4amber", line 807, in run
> >> stdout=subprocess.PIPE, stderr=subprocess.PIPE)
> >> File "/usr/lib/python2.7/subprocess.py", line 710, in __init__
> >> errread, errwrite)
> >> File "/usr/lib/python2.7/subprocess.py", line 1327, in _execute_child
> >> raise child_exception
> >> OSError: [Errno 2] No such file or directory
Please go to the $AMBERHOME/AmberTools/test/amberlite directory and type
./Run.pdb4amber
Make sure that everything says PASSED. This will help us to decide if there
is a problem with your installation.
...dac
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Received on Tue Jan 19 2016 - 05:30:04 PST
