[AMBER] Problem installing AmberTools1.5 on Mac OS X 10.11 EL Capitan

From: Ratkova, Ekaterina, Dr. <ekaterina.ratkova.helmholtz-muenchen.de>
Date: Fri, 15 Jan 2016 13:53:42 +0100 (CET)

Dear Amber developers,

I am trying to install AmberTools1.5 on EL Capitan OS X 10.11. According to the guide provided by Jason Swails http://jswails.wikidot.com/mac-os-x , I installed gcc, g++, and gfortran (version 4.9). Using these settings, I am able to install AmberTools1.3 and AmberTools1.4 (without update) with no problems. However, errors appear via the AmberTools1.5 installation.



At the stage of configuration for building serial amber ( $ ./configure -macAccelerate gnu ), everything works fine. I got errors during building the serial AT15 ($ make install). They start with:


In file included from /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/locale:182:

/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__locale:70:20: error: use of undeclared identifier 'LC_COLLATE_MASK'

collate = LC_COLLATE_MASK,

^

/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__locale:71:20: error: use of undeclared identifier 'LC_CTYPE_MASK'

ctype = LC_CTYPE_MASK,

^

/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__locale:72:20: error: use of undeclared identifier 'LC_MONETARY_MASK'

monetary = LC_MONETARY_MASK,

^

Then goes a long list of similar errors. At the end, I got the following:

fatal error: too many errors emitted, stopping now [-ferror-limit=]

20 errors generated.

error: command '/usr/bin/clang' failed with exit status 1

make[1]: *** [serial] Error 1

make: *** [install] Error 2
I would highly appreciate if you kindly help me to solve this problem.

Looking forward to hear from you.

Kind regards,
Ekaterina

-- 
Ekaterina Ratkova 
Alexander von Humboldt Postdoctoral Fellow 
Helmholtz Zentrum Muenchen 
Institute of Structural Biology 
Ingolstedter Landstra├če 1 
85764 Neuherberg 
Germany 
   
Helmholtz Zentrum Muenchen
Deutsches Forschungszentrum fuer Gesundheit und Umwelt (GmbH)
Ingolstaedter Landstr. 1
85764 Neuherberg
www.helmholtz-muenchen.de
Aufsichtsratsvorsitzende: MinDir'in Baerbel Brumme-Bothe
Geschaeftsfuehrer: Prof. Dr. Guenther Wess, Dr. Alfons Enhsen, Renate Schlusen (komm.)
Registergericht: Amtsgericht Muenchen HRB 6466
USt-IdNr: DE 129521671
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Received on Fri Jan 15 2016 - 05:00:03 PST
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