Dear Amber developers,
I am trying to install AmberTools1.5 on EL Capitan OS X 10.11. According to the guide provided by Jason Swails
http://jswails.wikidot.com/mac-os-x , I installed gcc, g++, and gfortran (version 4.9). Using these settings, I am able to install AmberTools1.3 and AmberTools1.4 (without update) with no problems. However, errors appear via the AmberTools1.5 installation.
At the stage of configuration for building serial amber ( $ ./configure -macAccelerate gnu ), everything works fine. I got errors during building the serial AT15 ($ make install). They start with:
In file included from /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/locale:182:
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__locale:70:20: error: use of undeclared identifier 'LC_COLLATE_MASK'
collate = LC_COLLATE_MASK,
^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__locale:71:20: error: use of undeclared identifier 'LC_CTYPE_MASK'
ctype = LC_CTYPE_MASK,
^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__locale:72:20: error: use of undeclared identifier 'LC_MONETARY_MASK'
monetary = LC_MONETARY_MASK,
^
Then goes a long list of similar errors. At the end, I got the following:
fatal error: too many errors emitted, stopping now [-ferror-limit=]
20 errors generated.
error: command '/usr/bin/clang' failed with exit status 1
make[1]: *** [serial] Error 1
make: *** [install] Error 2
I would highly appreciate if you kindly help me to solve this problem.
Looking forward to hear from you.
Kind regards,
Ekaterina
--
Ekaterina Ratkova
Alexander von Humboldt Postdoctoral Fellow
Helmholtz Zentrum Muenchen
Institute of Structural Biology
Ingolstedter Landstraße 1
85764 Neuherberg
Germany
Helmholtz Zentrum Muenchen
Deutsches Forschungszentrum fuer Gesundheit und Umwelt (GmbH)
Ingolstaedter Landstr. 1
85764 Neuherberg
www.helmholtz-muenchen.de
Aufsichtsratsvorsitzende: MinDir'in Baerbel Brumme-Bothe
Geschaeftsfuehrer: Prof. Dr. Guenther Wess, Dr. Alfons Enhsen, Renate Schlusen (komm.)
Registergericht: Amtsgericht Muenchen HRB 6466
USt-IdNr: DE 129521671
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Received on Fri Jan 15 2016 - 05:00:03 PST
