[AMBER] Angle calculation between two structures

From: anu chandra <anu80125.gmail.com>
Date: Fri, 15 Jan 2016 12:58:21 +0000

Dear Amber users,

The protein I am working with have three domains. Now I am trying to
calculate a dihedral angle defined by two structures, the starting
structure and a snapshot from simulation trajectory. More precisely, a
plane is drawn between the center of mass of three domains, and the
dihedral angle of interest is formed by this plane from starting structure
and a simulation snapshot. I just wondering possibilities of doing such an
angle calculation with CPPTRAJ.

Any help is appreciated

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Received on Fri Jan 15 2016 - 05:00:04 PST
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