Dear Amber developers,
I am trying to install AmberTools1.5 on EL Capitan OS X 10.11. According to the guide provided by Jason Swails
http://jswails.wikidot.com/mac-os-x , I installed gcc, g++, and gfortran (version 4.9). I am able to install AmberTools1.3 with no problems with these settings. However, errors appear via the AmberTools1.5 installation.
At the stage of configuration for building serial amber ( $ ./configure -macAccelerate gnu ), everything works fine. I got errors during building the serial AT15 ($ make install). They start with:
In file included from /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/locale:182:
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__locale:70:20: error: use of undeclared identifier 'LC_COLLATE_MASK'
collate = LC_COLLATE_MASK,
^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__locale:71:20: error: use of undeclared identifier 'LC_CTYPE_MASK'
ctype = LC_CTYPE_MASK,
^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__locale:72:20: error: use of undeclared identifier 'LC_MONETARY_MASK'
monetary = LC_MONETARY_MASK,
^
Then goes a long list of similar errors. At the end, I got the following:
fatal error: too many errors emitted, stopping now [-ferror-limit=]
20 errors generated.
error: command '/usr/bin/clang' failed with exit status 1
make[1]: *** [serial] Error 1
make: *** [install] Error 2
I would highly appreciate if you kindly help me to solve this problem.
Looking forward to hear from you.
Kind regards,
Ekaterina
--
Ekaterina Ratkova
Alexander von Humboldt postdoctoral fellow
Helmholtz Zentrum Menchen
Institute of Structural Biology
----------------------------------------------------------------------
--
Ekaterina Ratkova, PhD
Alexander von Humboldt postdoctoral fellow
Helmholtz Zentrum Menchen
Institute of Structural Biology
Ingolstedter Landstraße 1
85764 Neuherberg
e-mail: e.l.ratkova.gmail.com
tel: +49 (0) 176 28 37 34 83
----------------------------------------------------------------------
--
Ekaterina Ratkova, PhD
Alexander von Humboldt postdoctoral fellow
Helmholtz Zentrum Menchen
Institute of Structural Biology
Ingolstedter Landstraße 1
85764 Neuherberg
e-mail: e.l.ratkova.gmail.com
tel: +49 (0) 176 28 37 34 83
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Received on Fri Jan 15 2016 - 04:30:05 PST
