On Tue, Jan 5, 2016 at 11:51 AM, Levan Tsereteli <
Levan.Tsereteli.mpikg.mpg.de> wrote:
> No it did not work. When I am generating 123 units its all ok. If I am
> adding just one unit more everything breaks.
> with the following error. Have no idea what to do next. Any help will be
> appreciated.
>
I don't think it's that common to use the sequence command like this (I
certainly don't build anything more than ~10 residues with it). One idea
is to build up 120-residue chunks:
chunk1 = sequence {RES1 RES2 RES3 ... RES120}
chunk2 = sequence {RES121 RES122 ... RES
240}
...
system = sequence {chunk1 chunk2 ...}
This can recurse as long as is necessary to build the whole system. I'm
not sure if the resulting chunk# units remember their "head" and "tail"
designation (i.e., if tleap will know how to connect chunk1 and chunk2, for
instance), but it's at least worth a shot.
If that doesn't work, my next idea would be to grep for the 124 limit that
you found in the .m4 file and see if it appears to be hard-coded in other
places as well.
HTH,
Jason
--
Jason M. Swails
BioMaPS,
Rutgers University
Postdoctoral Researcher
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Received on Tue Jan 05 2016 - 09:00:04 PST
