[AMBER] GPU run fails

From: Fabian gmail <fabian.glaser.gmail.com>
Date: Thu, 12 Nov 2015 18:47:59 +0200

Hi,

I got a weird error when running GPU jobs:

1) From the output


|---------------- GPU PEER TO PEER INFO -----------------
|
| Peer to Peer support: ENABLED
|
|--------------------------------------------------------
 
| ERROR: I could not understand line 49846
 199.3676234-169.4028942 339.9971292


>From the qsub output

[fabian.amber long_100ns_r0]$ more wt0.o277
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
with errorcode 1.

NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
with errorcode 1.

NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
with errorcode 1.


any idea what is happennig?

Thanks!!

Fabian



Dr. Fabian Glaser
Head of the Structural Bioinformatics section

Bioinformatics Knowledge Unit - BKU
The Lorry I. Lokey Interdisciplinary Center for Life Sciences and Engineering
Technion - Israel Institute of Technology, Haifa 32000, ISRAEL

fglaser at technion dot ac dot il
Tel: +972 4 8293701
http://bku.technion.ac.il


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Received on Thu Nov 12 2015 - 09:00:07 PST
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