Hi Rahman,.
Thanks ...
After post this problem, I also try this
>> Sudo su (enter to the root)
root>./configure gnu
this is also doing well. I hope this is also can be an alternative solution.
Setyanto
On Tue, Sep 8, 2015 at 12:32 PM, MOHD HOMAIDUR RAHMAN <rahmanhpu.gmail.com>
wrote:
> Hi Setyanto
>
> I fixed the issue by doing
>
> >> cd $AMBERHOME"
> >> ./configure gnu without sudo
>
> HTH
> Rahman
>
> On Tue, Sep 8, 2015 at 10:33 AM, Setyanto Md <stwahyudi.md.gmail.com>
> wrote:
>
> > Dear Jason and David.
> >
> > I also have same problem with Rahman
> >
> > I just upgrade my ubuntu to 14.04.
> >
> > I download AmberTools15.tar.bz2 and put in /usr/local/
> >
> > Then extract it. The directory amber14 was shown /usr/local/amber14
> >
> > I also set AMBER Environment in /etc/bash/bash.rc
> >
> > export AMBERHOME=/usr/local/amber14
> > export PATH=$AMBERHOME/bin:$PATH
> > export PATH=$MPI_HOME/bin:$PATH
> > export LD_LIBRARY_PATH=$AMBERHOME/lib:$MPI_HOME/lib:$LD_LIBRARY_PATH
> >
> >
> > Then, I configure AmberTools15. with this command
> >
> > sudo
> >
> > ./configure gnu
> >
> > >>but there is a message ...
> >
> > Checking for updates...
> > Warning: AMBERHOME [None] differs from expected [/usr/local/amber14].
> > No changes will be made until this is fixed
> >
> > at the end ....
> >
> > Your AMBERHOME environment variable is not set! It should be set to
> > /usr/local/amber14 NOT doing so may cause errors when you compile.
> >
> > >>>>
> >
> > Would you mind to help me, please.
> >
> > Thank you.
> >
> >
> > Setyanto Tri Wahyudi
> >
> > On Tue, Feb 17, 2015 at 10:00 PM, David A Case <case.biomaps.rutgers.edu
> >
> > wrote:
> >
> > > On Tue, Feb 17, 2015, MOHD HOMAIDUR RAHMAN wrote:
> > >
> > > > Checking for updates...
> > > > Warning: AMBERHOME [None] differs from expected
> > > [/usr/local/sware/amber14].
> > > > No changes will be made until this is fixed
> > >
> > > >
> > > > I check the AMBERHOME path, it is right path where I already set
> > > >
> > > > rahman.rahman-R530-R730 /usr/local/sware/amber14 $ echo $AMBERHOME
> > > > /usr/local/sware/amber14
> > >
> > > You probably need to export your AMBERHOME variable, so that sub-shells
> > > can find it. Type "export AMBERHOME" if you are using the bash or zsh
> > > shells;
> > > type "setenv AMBERHOME" if you are using the c-shell.
> > >
> > > ....hope this helps....dac
> > >
> > >
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Received on Mon Sep 07 2015 - 23:00:04 PDT
