Hi Setyanto
I fixed the issue by doing
>> cd $AMBERHOME"
>> ./configure gnu without sudo
HTH
Rahman
On Tue, Sep 8, 2015 at 10:33 AM, Setyanto Md <stwahyudi.md.gmail.com> wrote:
> Dear Jason and David.
>
> I also have same problem with Rahman
>
> I just upgrade my ubuntu to 14.04.
>
> I download AmberTools15.tar.bz2 and put in /usr/local/
>
> Then extract it. The directory amber14 was shown /usr/local/amber14
>
> I also set AMBER Environment in /etc/bash/bash.rc
>
> export AMBERHOME=/usr/local/amber14
> export PATH=$AMBERHOME/bin:$PATH
> export PATH=$MPI_HOME/bin:$PATH
> export LD_LIBRARY_PATH=$AMBERHOME/lib:$MPI_HOME/lib:$LD_LIBRARY_PATH
>
>
> Then, I configure AmberTools15. with this command
>
> sudo
>
> ./configure gnu
>
> >>but there is a message ...
>
> Checking for updates...
> Warning: AMBERHOME [None] differs from expected [/usr/local/amber14].
> No changes will be made until this is fixed
>
> at the end ....
>
> Your AMBERHOME environment variable is not set! It should be set to
> /usr/local/amber14 NOT doing so may cause errors when you compile.
>
> >>>>
>
> Would you mind to help me, please.
>
> Thank you.
>
>
> Setyanto Tri Wahyudi
>
> On Tue, Feb 17, 2015 at 10:00 PM, David A Case <case.biomaps.rutgers.edu>
> wrote:
>
> > On Tue, Feb 17, 2015, MOHD HOMAIDUR RAHMAN wrote:
> >
> > > Checking for updates...
> > > Warning: AMBERHOME [None] differs from expected
> > [/usr/local/sware/amber14].
> > > No changes will be made until this is fixed
> >
> > >
> > > I check the AMBERHOME path, it is right path where I already set
> > >
> > > rahman.rahman-R530-R730 /usr/local/sware/amber14 $ echo $AMBERHOME
> > > /usr/local/sware/amber14
> >
> > You probably need to export your AMBERHOME variable, so that sub-shells
> > can find it. Type "export AMBERHOME" if you are using the bash or zsh
> > shells;
> > type "setenv AMBERHOME" if you are using the c-shell.
> >
> > ....hope this helps....dac
> >
> >
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Mon Sep 07 2015 - 23:00:03 PDT
