Dear Jason and David.
I also have same problem with Rahman
I just upgrade my ubuntu to 14.04.
I download AmberTools15.tar.bz2 and put in /usr/local/
Then extract it. The directory amber14 was shown /usr/local/amber14
I also set AMBER Environment in /etc/bash/bash.rc
export AMBERHOME=/usr/local/amber14
export PATH=$AMBERHOME/bin:$PATH
export PATH=$MPI_HOME/bin:$PATH
export LD_LIBRARY_PATH=$AMBERHOME/lib:$MPI_HOME/lib:$LD_LIBRARY_PATH
Then, I configure AmberTools15. with this command
sudo ./configure gnu
>>but there is a message ...
Checking for updates...
Warning: AMBERHOME [None] differs from expected [/usr/local/amber14].
No changes will be made until this is fixed
at the end ....
Your AMBERHOME environment variable is not set! It should be set to
/usr/local/amber14 NOT doing so may cause errors when you compile.
>>>>
Would you mind to help me, please.
Thank you.
Setyanto Tri Wahyudi
On Tue, Feb 17, 2015 at 10:00 PM, David A Case <case.biomaps.rutgers.edu>
wrote:
> On Tue, Feb 17, 2015, MOHD HOMAIDUR RAHMAN wrote:
>
> > Checking for updates...
> > Warning: AMBERHOME [None] differs from expected
> [/usr/local/sware/amber14].
> > No changes will be made until this is fixed
>
> >
> > I check the AMBERHOME path, it is right path where I already set
> >
> > rahman.rahman-R530-R730 /usr/local/sware/amber14 $ echo $AMBERHOME
> > /usr/local/sware/amber14
>
> You probably need to export your AMBERHOME variable, so that sub-shells
> can find it. Type "export AMBERHOME" if you are using the bash or zsh
> shells;
> type "setenv AMBERHOME" if you are using the c-shell.
>
> ....hope this helps....dac
>
>
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Received on Mon Sep 07 2015 - 22:30:03 PDT
