Re: [AMBER] how to add lipid

From: mohammad r <>
Date: Fri, 28 Aug 2015 14:26:49 +0000 (UTC)

Thank you all for your help.

     On Friday, August 28, 2015 6:04 PM, Jason Swails <> wrote:

 On Fri, Aug 28, 2015 at 3:09 AM, mohammad r <>

> Thank you Charles and Repic;
> I was used to use CHARMM-GUI  to simulate the lipid bilayer with
> amembrane-bound protein. But I don't know how I can simulate a box with a
> protein in center and lipids around it and the box is solvated with water.
> Is it really possible? If yes, which section in the website does it?

​I was under the impression that CHARMM GUI could build a membrane with a
protein embedded.

​If you  need help running CHARMM GUI, this isn't the right place for that
(the CHARMM GUI website should tell you where to go for help).


Jason M. Swails
Rutgers University
Postdoctoral Researcher
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Received on Fri Aug 28 2015 - 07:30:05 PDT
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