Re: [AMBER] adding NaCl

From: Bill Ross <>
Date: Wed, 19 Aug 2015 01:37:32 -0700

You could calculate the number of ions from first principles. Let's say
that number is 7 given the volume or number of waters in your system.
Then your cmd would be

> addIonsRand mySystem Na+ 7 Cl- 7


On 8/19/2015 12:25 AM, mohammad r wrote:
> Hi;
> I want to add 100mM NaCl to my system. Is it possible to do it by addIonsRand command? If it is,then I don't know how to specify 100mM. Which of the arguments specify this?addIonsRand unit ion1 #ion1 [ion2 #ion2] [separation]
> Thank you, Mohammad.
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Received on Wed Aug 19 2015 - 02:00:04 PDT
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