Re: [AMBER] converting amber files

From: Jason Swails <jason.swails.gmail.com>
Date: Tue, 18 Aug 2015 08:57:11 -0400

On Tue, Aug 18, 2015 at 8:12 AM, mohammad r <mohammad.r0325.yahoo.com>
wrote:

> Hi; I want to convert amber topology and coordinate files into gromacs
> topology and coordinate file with the acpype command ( acpype -p
> FFF_AC.prmtop -x FFF_AC.inpcrd ), but when I type it, I get this
> error:acpype: command not found
> I've already installed acpype with the "svn checkout
> http://acpype.googlecode.com/svn/trunk/ acpype" command.


‚ÄčThis is how you *download* acpype, not how you install it. There is a
wiki with instructions on how to use it:
https://code.google.com/p/acpype/wiki/HowToUse

The problem you have is that acpype is not in your PATH. This is a general
Unix concept -- if a program is not in your PATH, you cannot run it on the
command-line without specifying the location of the executable explicitly.
All of this stuff is usually explained in an introductory Unix tutorial.

HTH,
Jason

-- 
Jason M. Swails
BioMaPS,
Rutgers University
Postdoctoral Researcher
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Received on Tue Aug 18 2015 - 06:00:04 PDT
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