Re: [AMBER] STOP PMEMD Terminated Abnormally!

From: Pragya Priyadarshini <>
Date: Tue, 18 Aug 2015 09:45:12 +0530


Dear Swails,

Thanks alot for your kind response.

Best Regards

On 2015-08-17 22:19, Jason Swails wrote:

> On Mon, Aug 17, 2015 at 10:24 AM, Pragya Priyadarshini <
>> wrote:
>> Thanks for the reply. Since I am using same input file that I have prepared earlier for Amber11 where ioutfm=1 was for netCDF trajectory so I have used this only. I did not use ntxo=2 this time. So I want to be clear that, will this affect my MD run for 1-50 ns where i have used only ioutfm not ntxo?
> ​No, it will not affect your results.
> ​HTH,
> Jason

Pragya Priyadarshini
Junior Research Fellow
C/o Dr. Balvinder Singh
Bioinformatics Center (G N R P C)
Institute of Microbial Technology-CSIR
Sector 39A, Chandigarh-160036, INDIA
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Received on Mon Aug 17 2015 - 21:30:03 PDT
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