Re: [AMBER] FW: Regarding AMBER 14

From: praSanna kuMar naYak <>
Date: Tue, 11 Aug 2015 18:53:25 +0530

But if I will not run "make" inside individual directories inside AmberTools/src, then not all required binaries are created inside $AMBERHOME/bin directory. So please specify the proper installation procedure.

-----Original Message-----
From: Jason Swails []
Sent: 11 August 2015 18:41
To: AMBER Mailing List <>
Subject: Re: [AMBER] FW: Regarding AMBER 14

On Tue, Aug 11, 2015 at 7:59 AM, praSanna kuMar naYak <> wrote:

> Hi David,
> You told to do first the serial version and then parallel version,
> would you little bit specific about the complete installation of all
> tools of amber 14. Please specify the installation of both parallel
> and serial version of AMBER in the same Amber14 directory or what
> should be the actual procedure ?
> I was doing the installation as follows,
> $tar -xvf AmberTools15.tar.bz2
> $tar -xvf Amber14.tar.bz2
> $cd amber14
> Setting AMBERHOME variable
> $./configure -mpi intel
> $make
> $make install
> $cd AmberTools/src
> I'm doing make and make install in each and every directory.

‚ÄčThis is not the right approach. Given your stated need for prompt assistance, I highly recommend consulting the manual, within which you can likely find your answers much faster than consulting an email list (which will almost certainly take several hours if not a day or two to get a response).

There is an entire chapter specifically on installing Amber (chapter 2), and it is only about 5 pages. I recommend trying to find answers to your questions there, first.


Jason M. Swails
Rutgers University
Postdoctoral Researcher
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Received on Tue Aug 11 2015 - 06:30:06 PDT
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