[AMBER] Bad Atom type during running MMPBSA with cobalt metal ion

From: MOHD HOMAIDUR RAHMAN <rahmanhpu.gmail.com>
Date: Tue, 4 Aug 2015 11:53:36 +0530

Dear Amber Users

I have a metalloprotein (Co2+) complex bound to the substrate. I have
generated trajectory 60ns MD run using AMBER. Now I am planning to do
binding energy calculation for ligand-protein. I use AMBER12. Using
antechamber I got the necessary complex, ligand and receptor topology
files. However when I try to run MMPBSA.py, the error that i am getting is
bad atom type.

Can someone please help?
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Received on Mon Aug 03 2015 - 23:30:03 PDT
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