Attached are all the files that you requested for.
*Anwesha Sarkar*
*Research Scholar*
*Department of Biophysics,Molecular Biology and Bioinformatics*
*University of Calcutta*
On 2 July 2015 at 15:24, Gerald Monard <Gerald.Monard.univ-lorraine.fr>
wrote:
> In $AMBERHOME/logs/test_at_serial, there should be a log file. Can you
> send it? The error messages that you listed are too short to find the
> problem.
>
> Gerald.
>
> On 07/02/2015 11:45 AM, ANWESHA SARKAR wrote:
> > yeah i did that
> >
> >
> >
> > *Anwesha Sarkar*
> >
> > *Research Scholar*
> >
> > *Department of Biophysics,Molecular Biology and Bioinformatics*
> > *University of Calcutta*
> >
> > On 2 July 2015 at 15:00, Gerald Monard <Gerald.Monard.univ-lorraine.fr>
> > wrote:
> >
> >> Hello,
> >>
> >> Did you do 'source amber.sh' before running make test?
> >>
> >> Gerald.
> >>
> >> On 07/02/2015 11:16 AM, ANWESHA SARKAR wrote:
> >>> Hi Amber users,
> >>>
> >>> I have installed Ambertools 15 without Amber. On completion of the
> >>> installation procedure I had run the command make test. It gave me some
> >>> errors which are listed below:
> >>>
> >>> 1.
> >>>
> >>> ./Run.comprehensive: Program error
> >>> 2.
> >>>
> >>> make[3]: Target `test' not remade because of errors.
> >>> 3.
> >>>
> >>> make[2]: *** [test.mmpbsa] Error 2
> >>> 4.
> >>>
> >>> cd parmed/normag_prmtop &t' not remade because of errors.
> >> ./Run.parmed
> >>> 5.
> >>>
> >>> ./Run.parmed: Program error
> >>> 6.
> >>>
> >>> make[2]: *** [test.parmed] Error 1
> >>> 7.
> >>>
> >>> make[2]: Target `test.serial' not remade because of errors.
> >>> 8.
> >>>
> >>> make[3]: Target.serial' not remade because of errors.
> >>> 9.
> >>>
> >>> make[2]: [test.serial.sanderapi] Error 2 (ignored)
> >>> 10.
> >>>
> >>> Testing the C LES API gcc -I/home/anwesha/amber14/include
> >>> -L/home/anwesha/amber14/lib test.c -o testc -lsanderles
> >>>
> >>> (./testc && /bin/rm -f testc) || echo "Program error"
> >>> 11.
> >>>
> >>> Testing the C++ LES API g++
> >>> -I/home/anwesha/amber14/includeL/home/anwesha/amber14/lib
> test.cpp -o
> >>> testcpp -lsanderles (./testcpp && /bin/rm -f testcpp) || echo
> >> "Program
> >>> error"
> >>> 12.
> >>>
> >>> Testing the Python LES API (/usr/bin/python2.7 test.py) || echo
> >> "Program
> >>> error"
> >>>
> >>> I would like to know if these errors are serious errors and if yes
> please
> >>> suggest me a way out.
> >>>
> >>> Thanks in advance
> >>>
> >>> *Anwesha Sarkar*
> >>> _______________________________________________
> >>> AMBER mailing list
> >>> AMBER.ambermd.org
> >>> http://lists.ambermd.org/mailman/listinfo/amber
> >>>
> >>
> >> --
> >>
> >>
> ____________________________________________________________________________
> >>
> >> Prof. Gerald MONARD
> >> SRSMC, Université de Lorraine, CNRS
> >> Boulevard des Aiguillettes B.P. 70239
> >> F-54506 Vandoeuvre-les-Nancy, FRANCE
> >>
> >> e-mail : Gerald.Monard.univ-lorraine.fr
> >> tel. : +33 (0)383.684.381
> >> fax : +33 (0)383.684.371
> >> web : http://www.monard.info
> >>
> >>
> >>
> ____________________________________________________________________________
> >>
> >>
> >> _______________________________________________
> >> AMBER mailing list
> >> AMBER.ambermd.org
> >> http://lists.ambermd.org/mailman/listinfo/amber
> >>
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
>
> --
>
> ____________________________________________________________________________
>
> Prof. Gerald MONARD
> SRSMC, Université de Lorraine, CNRS
> Boulevard des Aiguillettes B.P. 70239
> F-54506 Vandoeuvre-les-Nancy, FRANCE
>
> e-mail : Gerald.Monard.univ-lorraine.fr
> tel. : +33 (0)383.684.381
> fax : +33 (0)383.684.371
> web : http://www.monard.info
>
>
> ____________________________________________________________________________
>
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
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Received on Thu Jul 02 2015 - 03:30:02 PDT
