Thanks.
Can you make the following test on the console:
call python, then type 'import ParmedTools.logos' and report the
results. If there is no error, please rerun the tests.
Gerald.
On 07/02/2015 12:25 PM, ANWESHA SARKAR wrote:
> Attached are all the files that you requested for.
>
>
> *Anwesha Sarkar*
>
> *Research Scholar*
>
> *Department of Biophysics,Molecular Biology and Bioinformatics*
> *University of Calcutta*
>
> On 2 July 2015 at 15:24, Gerald Monard <Gerald.Monard.univ-lorraine.fr>
> wrote:
>
>> In $AMBERHOME/logs/test_at_serial, there should be a log file. Can you
>> send it? The error messages that you listed are too short to find the
>> problem.
>>
>> Gerald.
>>
>> On 07/02/2015 11:45 AM, ANWESHA SARKAR wrote:
>>> yeah i did that
>>>
>>>
>>>
>>> *Anwesha Sarkar*
>>>
>>> *Research Scholar*
>>>
>>> *Department of Biophysics,Molecular Biology and Bioinformatics*
>>> *University of Calcutta*
>>>
>>> On 2 July 2015 at 15:00, Gerald Monard <Gerald.Monard.univ-lorraine.fr>
>>> wrote:
>>>
>>>> Hello,
>>>>
>>>> Did you do 'source amber.sh' before running make test?
>>>>
>>>> Gerald.
>>>>
>>>> On 07/02/2015 11:16 AM, ANWESHA SARKAR wrote:
>>>>> Hi Amber users,
>>>>>
>>>>> I have installed Ambertools 15 without Amber. On completion of the
>>>>> installation procedure I had run the command make test. It gave me some
>>>>> errors which are listed below:
>>>>>
>>>>> 1.
>>>>>
>>>>> ./Run.comprehensive: Program error
>>>>> 2.
>>>>>
>>>>> make[3]: Target `test' not remade because of errors.
>>>>> 3.
>>>>>
>>>>> make[2]: *** [test.mmpbsa] Error 2
>>>>> 4.
>>>>>
>>>>> cd parmed/normag_prmtop &t' not remade because of errors.
>>>> ./Run.parmed
>>>>> 5.
>>>>>
>>>>> ./Run.parmed: Program error
>>>>> 6.
>>>>>
>>>>> make[2]: *** [test.parmed] Error 1
>>>>> 7.
>>>>>
>>>>> make[2]: Target `test.serial' not remade because of errors.
>>>>> 8.
>>>>>
>>>>> make[3]: Target.serial' not remade because of errors.
>>>>> 9.
>>>>>
>>>>> make[2]: [test.serial.sanderapi] Error 2 (ignored)
>>>>> 10.
>>>>>
>>>>> Testing the C LES API gcc -I/home/anwesha/amber14/include
>>>>> -L/home/anwesha/amber14/lib test.c -o testc -lsanderles
>>>>>
>>>>> (./testc && /bin/rm -f testc) || echo "Program error"
>>>>> 11.
>>>>>
>>>>> Testing the C++ LES API g++
>>>>> -I/home/anwesha/amber14/includeL/home/anwesha/amber14/lib
>> test.cpp -o
>>>>> testcpp -lsanderles (./testcpp && /bin/rm -f testcpp) || echo
>>>> "Program
>>>>> error"
>>>>> 12.
>>>>>
>>>>> Testing the Python LES API (/usr/bin/python2.7 test.py) || echo
>>>> "Program
>>>>> error"
>>>>>
>>>>> I would like to know if these errors are serious errors and if yes
>> please
>>>>> suggest me a way out.
>>>>>
>>>>> Thanks in advance
>>>>>
>>>>> *Anwesha Sarkar*
>>>>> _______________________________________________
>>>>> AMBER mailing list
>>>>> AMBER.ambermd.org
>>>>> http://lists.ambermd.org/mailman/listinfo/amber
>>>>>
>>>>
>>>> --
>>>>
>>>>
>> ____________________________________________________________________________
>>>>
>>>> Prof. Gerald MONARD
>>>> SRSMC, Université de Lorraine, CNRS
>>>> Boulevard des Aiguillettes B.P. 70239
>>>> F-54506 Vandoeuvre-les-Nancy, FRANCE
>>>>
>>>> e-mail : Gerald.Monard.univ-lorraine.fr
>>>> tel. : +33 (0)383.684.381
>>>> fax : +33 (0)383.684.371
>>>> web : http://www.monard.info
>>>>
>>>>
>>>>
>> ____________________________________________________________________________
>>>>
>>>>
>>>> _______________________________________________
>>>> AMBER mailing list
>>>> AMBER.ambermd.org
>>>> http://lists.ambermd.org/mailman/listinfo/amber
>>>>
>>> _______________________________________________
>>> AMBER mailing list
>>> AMBER.ambermd.org
>>> http://lists.ambermd.org/mailman/listinfo/amber
>>>
>>
>> --
>>
>> ____________________________________________________________________________
>>
>> Prof. Gerald MONARD
>> SRSMC, Université de Lorraine, CNRS
>> Boulevard des Aiguillettes B.P. 70239
>> F-54506 Vandoeuvre-les-Nancy, FRANCE
>>
>> e-mail : Gerald.Monard.univ-lorraine.fr
>> tel. : +33 (0)383.684.381
>> fax : +33 (0)383.684.371
>> web : http://www.monard.info
>>
>>
>> ____________________________________________________________________________
>>
>>
>> _______________________________________________
>> AMBER mailing list
>> AMBER.ambermd.org
>> http://lists.ambermd.org/mailman/listinfo/amber
>>
>>
>>
>> _______________________________________________
>> AMBER mailing list
>> AMBER.ambermd.org
>> http://lists.ambermd.org/mailman/listinfo/amber
--
____________________________________________________________________________
Prof. Gerald MONARD
SRSMC, Université de Lorraine, CNRS
Boulevard des Aiguillettes B.P. 70239
F-54506 Vandoeuvre-les-Nancy, FRANCE
e-mail : Gerald.Monard.univ-lorraine.fr
tel. : +33 (0)383.684.381
fax : +33 (0)383.684.371
web : http://www.monard.info
____________________________________________________________________________
_______________________________________________
AMBER mailing list
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Received on Thu Jul 02 2015 - 05:00:02 PDT
