Re: [AMBER] savepdb command not working in xleap

From: David A Case <>
Date: Wed, 17 Jun 2015 10:27:21 -0600

On Wed, Jun 17, 2015, muhammad tahir ayub wrote:
> loadoff SEP.lib
> savepdb unitname modified_pdbname.pdb
> when i reload the pdb in unit editor of the xleap so all the atoms are
> disconnected in the unit editor after the connection throuhgh

This is expected: pdb files often don't have connectivity information.

When you "reloaded the pdb" did you first do the "loadoff SEP.lib" step?
That would then give xleap the needed connectivity information.


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Received on Wed Jun 17 2015 - 09:30:04 PDT
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