[AMBER] savepdb command not working in xleap

From: muhammad tahir ayub <tahirgp0.gmail.com>
Date: Wed, 17 Jun 2015 20:20:02 +0500

i have deal the protonation state problem of histidine by REDUCE software

but now when i have come across the phosphorylated residues, joining the
atoms of phosphorylated residues through the savepdb command

loadoff SEP.lib
savepdb unitname modified_pdbname.pdb

when i reload the pdb in unit editor of the xleap so all the atoms are
disconnected in the unit editor after the connection throuhgh

bondbydistance unitname

*Muhammad Tahir*

*Junior Research Fellow*

*H.E.J Research Institute of Chemistry*
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Received on Wed Jun 17 2015 - 08:30:03 PDT
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